PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2125s0010.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 265aa    MW: 28464.4 Da    PI: 9.14
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2125s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof38.42.6e-125293862
                  zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62
                            ryWt GG+lrnvPvGgg+rk k+++
  SapurV1A.2125s0010.2.p  5 RYWTLGGTLRNVPVGGGCRKGKRAK 29
                            9*******************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-6527IPR003851Zinc finger, Dof-type
PfamPF027012.7E-7527IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSLRYWTLG GTLRNVPVGG GCRKGKRAKT SSSSSSGETS RFHQQPQLLQ HNLAAPQNIL  60
ATNNSGNLSC PVLRNKESGN LVSPPPGMSP MGSYFPGGGL LTSLEAIQSL NTNQPPLQSF  120
PPQPLNQPVN LGGVLGETSN LGFLHGFNTV PPFGSQNQHQ IQFYHVGDRD TKSYEHSFYP  180
HNRESSIISS SRPATSSHDQ QQNWHHGFMN SSNPTVSDTA LWSTSTSTTV GHTNSNMINT  240
TVGSSPLIPD QWKHDHLPGF GPPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377380.11e-137hypothetical protein POPTR_0011s05410g
TrEMBLU5G1111e-137U5G111_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05410.11e-137(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.12e-09OBF binding protein 4